Commit Graph
2 Commits
Author SHA1 Message Date
kemal b012f74016 cloud trial: set HOME/PATH for cloud-init, unit tests non-fatal
The first run stopped after 1 minute (HOME unbound under set -u) and
terminated itself as designed.
2026-09-27 19:36:49 +01:00
kemal 6bea6c4930 Add self-destructing AWS trial and large-scale P1 validation script
scripts/cloud/trial.sh launches one spot instance that validates the
parsers on the 1000 Genomes Omni2.5 set (2141 samples, vendor GTCs)
streamed from the public S3 bucket, uploads the summary and terminates
itself. Cost guards: spot price cap, hard time limit (shutdown =
terminate), EXIT-trap shutdown, CloudWatch idle alarm that terminates
from outside, disk deleted with the instance, monthly budget alert, and
an `audit` command listing anything still billable.

scripts/validate_p1_large.py compares every GTC with BeadArrayFiles,
checks byte-identical round-trips, IDAT pairs and BPM/EGT/CSV.
2026-09-27 19:30:27 +01:00