3 Commits

Include renames

Author	SHA1	Message	Date
kemal	576c87d772	Release 2.0.0: v2 modules (ArrayTrain, CN/LOH, PGx, methylation QC) ... User guide: ArrayTrain section, v2 commands in the table, v2 accuracy rows, updated limitations. README status for v2.0.0. Version 2.0.0 (Python package); the Rust kernels are unchanged and stay simurg_core 1.1.0. uv.lock committed (uv lock --check clean). Full suite on the Pi, file by file under the memory guard: 29 files exit 0 (unit: 282 passed), ruff and mypy clean.	2026-09-30 06:24:12 +01:00
kemal	7f3cd96fc4	Release 1.1.0: compiled kernels (P9) and packaging (P10)	2026-09-28 23:56:39 +01:00
kemal	1f2abcbdba	P10 (WIP): release build script, Dockerfile, conda recipes, fresh-VM acceptance task ... scripts/build_dist.sh: sdist + pure wheel + manylinux_2_28 kernel wheels (maturin --zig, both architectures). Dockerfile (multi-stage, kernels included, non-root user). packaging/conda/{simurg,simurg-core}. scripts/p10/digest.py: platform-independent content digests of GTC/VCF/summary outputs. Cloud task p10 installs the artifacts on a fresh Ubuntu VM and runs the tutorial with pip, Docker and conda installs. trial.sh picks the arm64/amd64 image from the instance type and can run instances in parallel (PARALLEL=1). Licence files ship in both wheels; Rust crate notices added.	2026-09-28 22:41:56 +01:00