Commit Graph
1 Commits
Author SHA1 Message Date
kemal 7032074bfe P4: unit tests for calling/BAF/LRR/sex/CLI; vendor validation script
- tests/unit/test_genotype.py: fuzzy memberships incl. NaN rules, calls
  at cluster centres, intensity threshold, BAF/LRR interpolation and
  NaN pattern, LogR-dev locus set, sex rules v1/v2, TOP-strand base
  calls, invariant dates, end-to-end `simurg genotype` (summary schema,
  pass-through columns, thread/layout determinism, overwrite refusal)
- tests/oracle/test_p4_genotype.py: 36 GSA samples x 2 versions
  byte-identical to the oracle
- scripts/validate_p4_large.py + cloud task p4: compare every vendor
  GTC field by field and as whole files; reports which sex rule matches
2026-09-28 00:10:47 +01:00