4 Commits

Include renames

Author	SHA1	Message	Date
kemal	7f3cd96fc4	Release 1.1.0: compiled kernels (P9) and packaging (P10)	2026-09-28 23:56:39 +01:00
kemal	7767a596bb	P10 complete: packaging verified on fresh x86_64 and aarch64 VMs ... Wheels (pure + manylinux_2_28 kernels), sdist, Docker image and conda packages built and installed on fresh Ubuntu 24.04 machines; 225 unit tests pass against the installed package; the tutorial runs with pip (with and without kernels); GTC/VCF content digests are identical across pip, Docker and conda on both architectures and equal to the Pi's run. docs/validation/P10.md; guide: install from wheels, Docker, conda; exit code 141.	2026-09-28 23:53:59 +01:00
kemal	7d2dbe939e	P9 complete: compiled kernels validated (byte-identical, 78-80 GSA samples/min/core), scaling report ... Graviton3 c7g.8xlarge, 360 GSE165845 arrays: 360/360 GTCs identical between the Rust kernels and the pure-Python paths; 1 worker 78-80 samples/min (pure Python 29.6). Scaling 1->8 workers efficiency 0.87-0.90; above that the 125 MB/s gp3 disk caps the run (~620 samples/min) and, on a RAM disk, a fixed per-worker start-up cost limits a 360-sample batch to efficiency 0.48 at 32 workers (K-025). Worker state is pickled once. docs/validation/P9.md, result JSONs, guide/README/CHANGELOG updates.	2026-09-28 22:32:48 +01:00
kemal	f64bdf11f2	v1.0.0: user guide, examples, changelog ... docs/user_guide.md (install, inputs, complete run, commands, presets, QC, outputs, accuracy, limitations, troubleshooting), examples/gsa_demo.sh (end-to-end run on the public GSA demo, verified on the Pi), examples/sample_sheet.csv, CHANGELOG.md; version 1.0.0.	2026-09-28 20:38:24 +01:00