360 arrays vs NYGC 30x SV: all samples OK (K-027 gate fix), PASS precision
DEL 44 % / DUP 57 % (first run 39 % / 34 % with filters ignored), 61 % without
the one excess_events array; rare DEL sensitivity 30 %; LOH replicated 85 %.
m7g.4xlarge spot, 17 min. docs/validation/V2_cn.md, K-027.
GSE165845 360 arrays: constitutional DEL/DUP calls 77/74 % in the NYGC SV truth, LOH
reproduced across replicates 74 %; mosaic calls are mostly false positives (12-23 %),
sensitivity for 25 kb-1 Mb events 7-13 % at QUAL >= 20. All samples had been flagged
SampleQuality by the summary logr_dev (cluster-file mismatch); the gate now uses the SD
of the LRR after the batch reference. Validation script: --ignore-filter.
kemal